LWP-Wiki - Recent changes [en]

FreeSurfer

Chris — Wed, 15 Apr 2026 14:32:30 GMT

← Older revision		Revision as of 14:32, 15 April 2026
(One intermediate revision by the same user not shown)
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	. /opt/netapps/freesurfer/setup-freesurfer-v7.4.1.sh		. /opt/netapps/freesurfer/setup-freesurfer-v7.4.1.sh
	. /opt/netapps/freesurfer/setup-freesurfer-v8.2.0.sh		. /opt/netapps/freesurfer/setup-freesurfer-v8.2.0.sh
			. /opt/netapps/freesurfer/setup-freesurfer-dev.sh

	To automatically set up your environment when you open a terminal, run the command for the version you want to use:		To automatically set up your environment when you open a terminal, run the command for the version you want to use:
	echo "source /opt/netapps/freesurfer/setup-freesurfer-v7.4.1" >> ~/.bashrc		echo "source /opt/netapps/freesurfer/setup-freesurfer-v7.4.1" >> ~/.bashrc
	echo "source /opt/netapps/freesurfer/setup-freesurfer-v8.2.0" >> ~/.bashrc		echo "source /opt/netapps/freesurfer/setup-freesurfer-v8.2.0" >> ~/.bashrc
			echo "source /opt/netapps/freesurfer/setup-freesurfer-dev" >> ~/.bashrc

			To check if FreeSurfer is working, you can run the following command:
			/opt/netapps/freesurfer/setup-freesurfer-v7.4.1.sh -t
			/opt/netapps/freesurfer/setup-freesurfer-v8.2.0.sh -t
			/opt/netapps/freesurfer/setup-freesurfer-dev.sh -t

Main Page

Chris — Wed, 15 Apr 2026 09:26:59 GMT

← Older revision		Revision as of 09:26, 15 April 2026
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	== Announcements ==		== Announcements ==
	{{Announcement\| [[User:Chris\|Chris]] ([[User talk:Chris\|talk]]) 15:42, 2 December 2025 (UTC)\| New LWP version available, Ubuntu 24.04 LTS. [[Installing_the_LWP\| Install instructions here]].}}		{{Announcement\| [[User:Chris\|Chris]] ([[User talk:Chris\|talk]]) 15:42, 2 December 2025 (UTC)\| New LWP version available, Ubuntu 24.04 LTS. [[Installing_the_LWP\| Install instructions here]].}}
			{{Announcement\| [[User:Chris\|Chris]] ([[User talk:Chris\|talk]]) 09:26, 15 April 2026 (UTC)\| '''[[FreeSurfer]]''' neuroimaging software and '''[[ITK-SNAP]]''' medical image segmentation tool have been made available. Click the links for setup instructions.}}
	If you're having trouble with your LWP and the solution isn't in our [[FAQ]], contact us by using the '''support''' program on the LWP's (if possible) by entering "support" on a LWP command line or selecting it from the menu.<br/>		If you're having trouble with your LWP and the solution isn't in our [[FAQ]], contact us by using the '''support''' program on the LWP's (if possible) by entering "support" on a LWP command line or selecting it from the menu.<br/>
	For more general questions you can contact us by sending a mail to [mailto:lwp@rug.nl lwp@rug.nl].		For more general questions you can contact us by sending a mail to [mailto:lwp@rug.nl lwp@rug.nl].

FreeSurfer

Chris — Wed, 15 Apr 2026 09:26:31 GMT

Created page with "[https://surfer.nmr.mgh.harvard.edu/fswiki/FreeSurferWiki FreeSurfer] is a software package for the analysis and visualization of structural and functional neuroimaging data from cross-sectional or longitudinal studies. To set up your environment run the command for the version you want to use: . /opt/netapps/freesurfer/setup-freesurfer-v7.4.1.sh . /opt/netapps/freesurfer/setup-freesurfer-v8.2.0.sh To automatically set up your environment when you open a te..."

New page

[https://surfer.nmr.mgh.harvard.edu/fswiki/FreeSurferWiki FreeSurfer] is a software package for the analysis and visualization of structural and functional neuroimaging data from cross-sectional or longitudinal studies. 
 
To set up your environment run the command for the version you want to use:
. /opt/netapps/freesurfer/setup-freesurfer-v7.4.1.sh
. /opt/netapps/freesurfer/setup-freesurfer-v8.2.0.sh

To automatically set up your environment when you open a terminal, run the command for the version you want to use:
echo "source /opt/netapps/freesurfer/setup-freesurfer-v7.4.1" >> ~/.bashrc
echo "source /opt/netapps/freesurfer/setup-freesurfer-v8.2.0" >> ~/.bashrc

ITK-SNAP

Chris — Wed, 15 Apr 2026 09:20:02 GMT

Created page with "[https://www.itksnap.org/pmwiki/pmwiki.php?n=Main.HomePage ITK-SNAP] is a free, open-source, multi-platform software application used to segment structures in 3D and 4D biomedical images. To set up your environment run the following command: . /opt/netapps/itksnap/setup-itksnap.sh To automatically set up your environment when you open a terminal: echo "source /opt/netapps/itksnap/setup-itksnap.sh" >> ~/.bashrc"

New page

[https://www.itksnap.org/pmwiki/pmwiki.php?n=Main.HomePage ITK-SNAP] is a free, open-source, multi-platform software application used to segment structures in 3D and 4D biomedical images. 
 
To set up your environment run the following command:
. /opt/netapps/itksnap/setup-itksnap.sh

To automatically set up your environment when you open a terminal: 
echo "source /opt/netapps/itksnap/setup-itksnap.sh" >> ~/.bashrc