FreeSurfer: Difference between revisions
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. /opt/netapps/freesurfer/setup-freesurfer-v7.4.1.sh | . /opt/netapps/freesurfer/setup-freesurfer-v7.4.1.sh | ||
. /opt/netapps/freesurfer/setup-freesurfer-v8.2.0.sh | . /opt/netapps/freesurfer/setup-freesurfer-v8.2.0.sh | ||
. /opt/netapps/freesurfer/setup-freesurfer-dev.sh | |||
To automatically set up your environment when you open a terminal, run the command for the version you want to use: | To automatically set up your environment when you open a terminal, run the command for the version you want to use: | ||
echo "source /opt/netapps/freesurfer/setup-freesurfer-v7.4.1" >> ~/.bashrc | echo "source /opt/netapps/freesurfer/setup-freesurfer-v7.4.1" >> ~/.bashrc | ||
echo "source /opt/netapps/freesurfer/setup-freesurfer-v8.2.0" >> ~/.bashrc | echo "source /opt/netapps/freesurfer/setup-freesurfer-v8.2.0" >> ~/.bashrc | ||
echo "source /opt/netapps/freesurfer/setup-freesurfer-dev" >> ~/.bashrc | |||
To check if FreeSurfer is working, you can run the following command: | To check if FreeSurfer is working, you can run the following command: | ||
/opt/netapps/freesurfer/setup-freesurfer-v7.4.1.sh -t | /opt/netapps/freesurfer/setup-freesurfer-v7.4.1.sh -t | ||
/opt/netapps/freesurfer/setup-freesurfer-v8.2.0.sh -t | /opt/netapps/freesurfer/setup-freesurfer-v8.2.0.sh -t | ||
/opt/netapps/freesurfer/setup-freesurfer-dev.sh -t | |||
Latest revision as of 14:32, 15 April 2026
FreeSurfer is a software package for the analysis and visualization of structural and functional neuroimaging data from cross-sectional or longitudinal studies.
To set up your environment run the command for the version you want to use:
. /opt/netapps/freesurfer/setup-freesurfer-v7.4.1.sh . /opt/netapps/freesurfer/setup-freesurfer-v8.2.0.sh . /opt/netapps/freesurfer/setup-freesurfer-dev.sh
To automatically set up your environment when you open a terminal, run the command for the version you want to use:
echo "source /opt/netapps/freesurfer/setup-freesurfer-v7.4.1" >> ~/.bashrc echo "source /opt/netapps/freesurfer/setup-freesurfer-v8.2.0" >> ~/.bashrc echo "source /opt/netapps/freesurfer/setup-freesurfer-dev" >> ~/.bashrc
To check if FreeSurfer is working, you can run the following command:
/opt/netapps/freesurfer/setup-freesurfer-v7.4.1.sh -t /opt/netapps/freesurfer/setup-freesurfer-v8.2.0.sh -t /opt/netapps/freesurfer/setup-freesurfer-dev.sh -t