Bagel4

Bagel 4

Bagel 4 has been made available on the LWP via the network drive /opt/netapps/. To set up your environment run the following script or add it to your ~/.bashrc file to do it automatically when you open a terminal:

source /opt/netapps/bagel/bagel-setup.sh

Run the following command to test if it is working:

mkdir -p ~/bagel/tmp/examplesession/ && bagel4_wrapper.pl -s ~/bagel/tmp/examplesession/ -query /opt/netapps/bagel/bagel4_2022/example/ -r '*.fna'