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(Created page with "== Bagel 4 == Bagel 4 has been made available via /opt/netapps/. To set up your environment run the following script or add it to your '''~/.bashrc''' file to do it automatic...") |
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[[Category:software-faq]] | |||
== Bagel 4 == | == Bagel 4 == | ||
<br> | |||
Bagel 4 has been made available via /opt/netapps/. To set up your environment run the following script or add it to your '''~/.bashrc''' file to do it automatically when you open a terminal: | Bagel 4 has been made available on the LWP via the network drive '''/opt/netapps/'''. To set up your environment run the following script or add it to your '''~/.bashrc''' file to do it automatically when you open a terminal: | ||
source /opt/netapps/bagel/bagel-setup.sh | source /opt/netapps/bagel/bagel-setup.sh | ||
Run the following command to test if it is working: | Run the following command to test if it is working: | ||
mkdir -p ~/bagel/tmp/examplesession/ && bagel4_wrapper.pl -s ~/bagel/tmp/examplesession/ -query /opt/netapps/bagel/bagel4_2022/example/ -r '*.fna' | mkdir -p ~/bagel/tmp/examplesession/ && \ | ||
bagel4_wrapper.pl -s ~/bagel/tmp/examplesession/ -query /opt/netapps/bagel/bagel4_2022/example/ -r '*.fna' | |||
Latest revision as of 11:00, 28 February 2023
Bagel 4
Bagel 4 has been made available on the LWP via the network drive /opt/netapps/. To set up your environment run the following script or add it to your ~/.bashrc file to do it automatically when you open a terminal:
source /opt/netapps/bagel/bagel-setup.sh
Run the following command to test if it is working:
mkdir -p ~/bagel/tmp/examplesession/ && \ bagel4_wrapper.pl -s ~/bagel/tmp/examplesession/ -query /opt/netapps/bagel/bagel4_2022/example/ -r '*.fna'